PNPS instead of ElectrostMod
From Harlem
ElMod is a wrap of PNPS, which mimic behavior of ElectrostMod. It is possible to use it automatically instead ElectrostMod in all subroutines which call ElectrostMod from HaMolSet using GetElectrostMod method. To do so you need to execute the following python commands:
pmset=GetCurMolSet() pmset.ElectroMod=COMP_MOD_EL
Now you can ran your electrostatic calculation like usually but ElMod will be used instead of ElectrostMod.
To switch back you need to run:
pmset=GetCurMolSet() pmset.ElectroMod=COMP_MOD_ELECTROST
Contents |
[edit] Tests
[edit] System
1I1B.HLM GridSize 121 PerFile 40 GridScale 0.9678029 EpsIn 4 EpsOut 81 Solvent Probe Radius 1.4 Ion Exclusion Radius 2.0 Ion Strength 0.0/0.1/1.0
[edit] LPB
| Solver | E,I=0.0 | E,I=0.1 | dE,I=0.1 | E,I=1.0 | dE,I=1.0 |
| DELPHI | 10375.494141 | 10372.915039 | -2.58 | 10368.162109 | -7.33 |
| PNPS | 10450.197052 | 10447.567566 | -2.63 | 10442.614294 | -7.58 |
[edit] NPB
| Solver | E,I=0.0 | E,I=0.1 | dE,I=0.1 | E,I=1.0 | dE,I=1.0 |
| DELPHI | 10375.494141 | 10372.543945 | -2.95 | 10367.853516 | -7.64 |
| PNPS | 10450.197052 | 10447.150655 | -3.05 | 10442.257219 | -7.94 |
